Whole-genome sequencing of the C. remanei PX506 inbred line - SRA

SRX6989867: Whole-genome sequencing of the C. remanei PX506 inbred line
1 ILLUMINA (Illumina HiSeq 4000) run: 27.1M spots, 5.5G bases, 2.4Gb downloads

Design: Whole-genome sequencing of PX506 strain using the Nextera kit (Illumina) of 100bp paired-end reads and Hi-Seq 4000 platform (University of Oregon Sequencing Facility, Eugene, OR).

Submitted by: University of Oregon

Study: Genome assembly of the Caenorhabditis remanei PX506 strain

PRJNA577507 • SRP225597 • All experiments • All runs

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Caenorhabditis remanei is an obligate outcrossing nematode, a member of the 'Elegans' supergroup. We generated a chromosome-level genome assembly of the C. remanei PX506 inbred strain created from a wild isolate from an isopod collected in a forest near Toronto (Canada) using PacBio and Hi-C data, Illumina reads. In addition to publicly available transcriptomic data, we obtained full-transcript sequences (IsoSeq) to annotate the genome.

Sample:

SAMN13028143 • SRS5511979 • All experiments • All runs

Organism: Caenorhabditis remanei

Library:

Name: C.remanei_PX506_Illumina_WGS_run2

Instrument: Illumina HiSeq 4000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 27.1M spots, 5.5G bases, 2.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR10276662	27,069,793	5.5G	2.4Gb	2019-10-15

ID:: 9191916

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